API

• combiners package
  • Submodules
  • combiners.combiner module
    • CSVCombineTask
      • CSVCombineTask._abc_impl
      • CSVCombineTask._namespace_at_class_time
      • CSVCombineTask._read()
      • CSVCombineTask._read_and_combine()
      • CSVCombineTask._write()
      • CSVCombineTask.ingestor_name
      • CSVCombineTask.output()
      • CSVCombineTask.requires()
    • log_assertion()
  • combiners.generic module
    • GenericMultiCSVIngestionTask
      • GenericMultiCSVIngestionTask._abc_impl
      • GenericMultiCSVIngestionTask._namespace_at_class_time
      • GenericMultiCSVIngestionTask._read()
      • GenericMultiCSVIngestionTask.requires()
  • combiners.load_file module
    • LoadFileTask
      • LoadFileTask._abc_impl
      • LoadFileTask._handle_bad_line()
      • LoadFileTask._namespace_at_class_time
      • LoadFileTask._read()
      • LoadFileTask._write()
      • LoadFileTask.csv_path
      • LoadFileTask.ingestor_name
      • LoadFileTask.output()
  • Module contents
• config module
• digital_twin package
  • Subpackages
    • digital_twin.convert_to_states_transitions package
      • Module contents
    • digital_twin.enrich_ward_moves package
      • Module contents
    • digital_twin.get_admission_reasons package
      • Module contents
    • digital_twin.transform_elective_planning package
      • Module contents
    • digital_twin.transform_ward_data package
      • Module contents
  • Module contents
• ingestors package
  • Submodules
  • ingestors.ingest_CRIS module
    • IngestCRISTask
      • IngestCRISTask._abc_impl
      • IngestCRISTask._convert_null_value_to_nan()
      • IngestCRISTask._namespace_at_class_time
      • IngestCRISTask._read()
      • IngestCRISTask.column_rename_schema
      • IngestCRISTask.intermediate_file_path
      • IngestCRISTask.name
      • IngestCRISTask.reader_args
      • IngestCRISTask.validation_schema
  • ingestors.ingest_additional_features module
    • AdditionalFeaturesIngestionTask
      • AdditionalFeaturesIngestionTask._abc_impl
      • AdditionalFeaturesIngestionTask._namespace_at_class_time
      • AdditionalFeaturesIngestionTask.intermediate_file_path
      • AdditionalFeaturesIngestionTask.name
      • AdditionalFeaturesIngestionTask.validation_schema
  • ingestors.ingest_appointments module
    • IngestAppointmentsTask
      • IngestAppointmentsTask._abc_impl
      • IngestAppointmentsTask._namespace_at_class_time
      • IngestAppointmentsTask.column_rename_schema
      • IngestAppointmentsTask.intermediate_file_path
      • IngestAppointmentsTask.name
      • IngestAppointmentsTask.reader_args
      • IngestAppointmentsTask.validation_schema
  • ingestors.ingest_bluespier module
    • IngestBluespierTask
      • IngestBluespierTask._abc_impl
      • IngestBluespierTask._namespace_at_class_time
      • IngestBluespierTask.column_rename_schema
      • IngestBluespierTask.intermediate_file_path
      • IngestBluespierTask.name
      • IngestBluespierTask.reader_args
      • IngestBluespierTask.validation_schema
  • ingestors.ingest_confidence_lookup_table module
  • ingestors.ingest_current_ward_stays module
  • ingestors.ingest_elective_planning module
    • IngestElectivePlanningTask
      • IngestElectivePlanningTask._abc_impl
      • IngestElectivePlanningTask._namespace_at_class_time
      • IngestElectivePlanningTask.column_rename_schema
      • IngestElectivePlanningTask.intermediate_file_path
      • IngestElectivePlanningTask.name
      • IngestElectivePlanningTask.reader_args
      • IngestElectivePlanningTask.validation_schema
  • ingestors.ingest_episodes module
    • IngestEpisodesTask
      • IngestEpisodesTask._abc_impl
      • IngestEpisodesTask._namespace_at_class_time
      • IngestEpisodesTask.column_rename_schema
      • IngestEpisodesTask.intermediate_file_path
      • IngestEpisodesTask.name
      • IngestEpisodesTask.reader_args
      • IngestEpisodesTask.validation_schema
  • ingestors.ingest_ews_nervecentre module
  • ingestors.ingest_nervecenter_features module
  • ingestors.ingest_orders module
    • IngestOrdersTask
      • IngestOrdersTask._abc_impl
      • IngestOrdersTask._namespace_at_class_time
      • IngestOrdersTask.column_rename_schema
      • IngestOrdersTask.intermediate_file_path
      • IngestOrdersTask.name
      • IngestOrdersTask.reader_args
      • IngestOrdersTask.validation_schema
  • ingestors.ingest_orders_actions module
    • IngestOrdersActionsTask
      • IngestOrdersActionsTask._abc_impl
      • IngestOrdersActionsTask._namespace_at_class_time
      • IngestOrdersActionsTask.column_rename_schema
      • IngestOrdersActionsTask.intermediate_file_path
      • IngestOrdersActionsTask.name
      • IngestOrdersActionsTask.reader_args
      • IngestOrdersActionsTask.validation_schema
  • ingestors.ingest_past_booked_cases module
  • ingestors.ingest_patient_arrival_history module
  • ingestors.ingest_patient_demographics module
    • IngestPatientDemographicsTask
      • IngestPatientDemographicsTask._abc_impl
      • IngestPatientDemographicsTask._namespace_at_class_time
      • IngestPatientDemographicsTask.column_rename_schema
      • IngestPatientDemographicsTask.intermediate_file_path
      • IngestPatientDemographicsTask.name
      • IngestPatientDemographicsTask.reader_args
      • IngestPatientDemographicsTask.validation_schema
  • ingestors.ingest_patient_referral module
    • IngestPatientReferralTask
      • IngestPatientReferralTask._abc_impl
      • IngestPatientReferralTask._namespace_at_class_time
      • IngestPatientReferralTask.column_rename_schema
      • IngestPatientReferralTask.intermediate_file_path
      • IngestPatientReferralTask.name
      • IngestPatientReferralTask.reader_args
      • IngestPatientReferralTask.validation_schema
  • ingestors.ingest_patient_result module
    • IngestPatientResultTask
      • IngestPatientResultTask._abc_impl
      • IngestPatientResultTask._namespace_at_class_time
      • IngestPatientResultTask.column_rename_schema
      • IngestPatientResultTask.intermediate_file_path
      • IngestPatientResultTask.name
      • IngestPatientResultTask.reader_args
      • IngestPatientResultTask.validation_schema
  • ingestors.ingest_patient_spell module
    • IngestPatientSpellTask
      • IngestPatientSpellTask._abc_impl
      • IngestPatientSpellTask._namespace_at_class_time
      • IngestPatientSpellTask.column_rename_schema
      • IngestPatientSpellTask.intermediate_file_path
      • IngestPatientSpellTask.name
      • IngestPatientSpellTask.reader_args
      • IngestPatientSpellTask.validation_schema
  • ingestors.ingest_patient_tracking_list module
    • IngestPatientTrackerListTask
      • IngestPatientTrackerListTask._abc_impl
      • IngestPatientTrackerListTask._namespace_at_class_time
      • IngestPatientTrackerListTask.column_rename_schema
      • IngestPatientTrackerListTask.intermediate_file_path
      • IngestPatientTrackerListTask.name
      • IngestPatientTrackerListTask.reader_args
      • IngestPatientTrackerListTask.validation_schema
  • ingestors.ingest_pre_appointment module
    • IngestPreAppointmentTask
      • IngestPreAppointmentTask._abc_impl
      • IngestPreAppointmentTask._namespace_at_class_time
      • IngestPreAppointmentTask.column_rename_schema
      • IngestPreAppointmentTask.intermediate_file_path
      • IngestPreAppointmentTask.name
      • IngestPreAppointmentTask.reader_args
      • IngestPreAppointmentTask.validation_schema
  • ingestors.ingest_preop_assessment module
    • IngestPreopAssessmentTask
      • IngestPreopAssessmentTask._abc_impl
      • IngestPreopAssessmentTask._namespace_at_class_time
      • IngestPreopAssessmentTask.column_rename_schema
      • IngestPreopAssessmentTask.intermediate_file_path
      • IngestPreopAssessmentTask.name
      • IngestPreopAssessmentTask.reader_args
      • IngestPreopAssessmentTask.validation_schema
  • ingestors.ingest_referral_to_treatment module
    • IngestReferralToTreatmentTask
      • IngestReferralToTreatmentTask._abc_impl
      • IngestReferralToTreatmentTask._namespace_at_class_time
      • IngestReferralToTreatmentTask.column_rename_schema
      • IngestReferralToTreatmentTask.intermediate_file_path
      • IngestReferralToTreatmentTask.name
      • IngestReferralToTreatmentTask.reader_args
      • IngestReferralToTreatmentTask.validation_schema
  • ingestors.ingest_specialty_lookup module
  • ingestors.ingest_table module
    • IngestKPITableTask
      • IngestKPITableTask._abc_impl
      • IngestKPITableTask._namespace_at_class_time
      • IngestKPITableTask.all_names_hash
      • IngestKPITableTask.intermediate_file_path
      • IngestKPITableTask.root
      • IngestKPITableTask.run()
      • IngestKPITableTask.validation_schema()
    • IngestModelVersionTableTask
      • IngestModelVersionTableTask._abc_impl
      • IngestModelVersionTableTask._namespace_at_class_time
      • IngestModelVersionTableTask.filter_range_start
      • IngestModelVersionTableTask.output()
      • IngestModelVersionTableTask.run()
    • IngestTableTask
      • IngestTableTask._abc_impl
      • IngestTableTask._namespace_at_class_time
      • IngestTableTask._read()
      • IngestTableTask.intermediate_file_path
      • IngestTableTask.output()
      • IngestTableTask.run()
      • IngestTableTask.validation_schema()
  • ingestors.ingest_ward_lookup module
  • Module contents
• patient_tracker package
  • Subpackages
    • patient_tracker.transform_KPI_volume package
      • Submodules
      • patient_tracker.transform_KPI_volume._transformations module
      • Module contents
    • patient_tracker.transform_PTL package
      • Submodules
      • patient_tracker.transform_PTL._transformations module
        • get_most_recent_ptl_status()
      • Module contents
        • TransformPTL
          • TransformPTL._abc_impl
          • TransformPTL._namespace_at_class_time
          • TransformPTL._read()
          • TransformPTL._write()
          • TransformPTL.clone_parent()
          • TransformPTL.clone_parents()
          • TransformPTL.intermediate_file_path
          • TransformPTL.name
          • TransformPTL.output()
          • TransformPTL.requires()
          • TransformPTL.run()
    • patient_tracker.transform_PTL_statuses package
      • Submodules
      • patient_tracker.transform_PTL_statuses._transformations module
      • Module contents
    • patient_tracker.transform_clinic_codes package
      • Submodules
      • patient_tracker.transform_clinic_codes._transformations module
      • Module contents
    • patient_tracker.transform_clinician package
      • Submodules
      • patient_tracker.transform_clinician._transformations module
      • Module contents
    • patient_tracker.transform_event_statuses package
      • Module contents
    • patient_tracker.transform_event_type_milestones package
      • Submodules
      • patient_tracker.transform_event_type_milestones._transformations module
      • Module contents
    • patient_tracker.transform_event_types package
      • Submodules
      • patient_tracker.transform_event_types._transformations module
      • Module contents
    • patient_tracker.transform_events package
      • Subpackages
        • patient_tracker.transform_events.transform_RTT_other package
          • Submodules
          • patient_tracker.transform_events.transform_RTT_other._transformations module
          • Module contents
        • patient_tracker.transform_events.transform_death package
          • Submodules
          • patient_tracker.transform_events.transform_death._transformations module
          • Module contents
        • patient_tracker.transform_events.transform_diagnostic package
          • Submodules
          • patient_tracker.transform_events.transform_diagnostic._transformations module
          • Module contents
        • patient_tracker.transform_events.transform_discharged package
          • Submodules
          • patient_tracker.transform_events.transform_discharged._transformations module
          • Module contents
        • patient_tracker.transform_events.transform_first_OPA package
          • Submodules
          • patient_tracker.transform_events.transform_first_OPA._transformations module
          • Module contents
        • patient_tracker.transform_events.transform_followup_OPA package
          • Submodules
          • patient_tracker.transform_events.transform_followup_OPA._transformations module
          • Module contents
        • patient_tracker.transform_events.transform_orders package
          • Submodules
          • patient_tracker.transform_events.transform_orders._transformations module
          • Module contents
        • patient_tracker.transform_events.transform_pre_appointment package
          • Module contents
        • patient_tracker.transform_events.transform_referral package
          • Submodules
          • patient_tracker.transform_events.transform_referral._transformations module
          • Module contents
        • patient_tracker.transform_events.transform_results package
          • Submodules
          • patient_tracker.transform_events.transform_results._transformations module
          • Module contents
        • patient_tracker.transform_events.transform_treatment package
          • Subpackages
            • patient_tracker.transform_events.transform_treatment.medicine package
              • Submodules
              • patient_tracker.transform_events.transform_treatment.medicine._transformations module
              • Module contents
            • patient_tracker.transform_events.transform_treatment.surgery package
              • Submodules
              • patient_tracker.transform_events.transform_treatment.surgery._transformations module
              • Module contents
            • patient_tracker.transform_events.transform_treatment.therapy package
              • Module contents
          • Module contents
      • Submodules
      • patient_tracker.transform_events.generic module
      • patient_tracker.transform_events.reducer module
      • Module contents
    • patient_tracker.transform_exclusion_rules package
      • Submodules
      • patient_tracker.transform_exclusion_rules.rules module
        • Rule
          • Rule.Description
          • Rule.Name
          • Rule.args
          • Rule.function
          • Rule.source
        • attach_most_recent_appointment_details()
        • drop_pathways_with_date_of_death()
        • drop_referrals_by_PTL_status()
        • drop_referrals_by_status()
        • drop_referrals_with_close_date()
        • drop_referrals_with_discharged_outcome()
        • filter_by_appointment_outcome_and_date()
        • filter_community_dental()
        • filter_no_appointments()
        • remove_discharged_appointments()
      • Module contents
    • patient_tracker.transform_exclusion_rules_patient_pathway package
      • Submodules
      • patient_tracker.transform_exclusion_rules_patient_pathway._transformations module
      • Module contents
    • patient_tracker.transform_logging package
      • Submodules
      • patient_tracker.transform_logging._transformations module
      • Module contents
    • patient_tracker.transform_milestones package
      • Module contents
    • patient_tracker.transform_pathway package
      • Submodules
      • patient_tracker.transform_pathway._transformations module
      • Module contents
    • patient_tracker.transform_pathway_stages package
      • Module contents
    • patient_tracker.transform_patient_demographics package
      • Submodules
      • patient_tracker.transform_patient_demographics._transformations module
      • Module contents
    • patient_tracker.transform_patient_pathway package
      • Submodules
      • patient_tracker.transform_patient_pathway._transformations module
      • Module contents
    • patient_tracker.transform_priority package
      • Submodules
      • patient_tracker.transform_priority._transformations module
      • Module contents
    • patient_tracker.transform_referrals_filter package
      • Module contents
        • TransformReferralsFilterTask
          • TransformReferralsFilterTask._abc_impl
          • TransformReferralsFilterTask._namespace_at_class_time
          • TransformReferralsFilterTask._read()
          • TransformReferralsFilterTask._write()
          • TransformReferralsFilterTask.clone_parent()
          • TransformReferralsFilterTask.clone_parents()
          • TransformReferralsFilterTask.name
          • TransformReferralsFilterTask.output()
          • TransformReferralsFilterTask.referral_filter_on
          • TransformReferralsFilterTask.requires()
          • TransformReferralsFilterTask.run()
    • patient_tracker.transform_specialty package
      • Submodules
      • patient_tracker.transform_specialty._transformations module
      • Module contents
    • patient_tracker.transform_surgical_priority package
      • Submodules
      • patient_tracker.transform_surgical_priority._transformations module
      • Module contents
  • Module contents
• pdms package
  • Subpackages
    • pdms.explode_spells package
      • Module contents
    • pdms.feature_engineer package
      • Module contents
    • pdms.filter_spells package
      • Module contents
    • pdms.generate_prediction package
      • Submodules
      • pdms.generate_prediction._transformations module
      • Module contents
    • pdms.generate_spells package
      • Module contents
    • pdms.transform_current_ward_stays package
      • Module contents
    • pdms.transform_ews_nervecentre package
      • Module contents
    • pdms.transform_nervecenter_features package
      • Module contents
    • pdms.transform_past_booked_cases package
      • Module contents
    • pdms.transform_patient_arrival_history package
      • Module contents
  • Submodules
  • pdms.catalyst_pdms_transformation_task module
  • Module contents
• table_truncator package
  • Module contents
• utils module